SMP Budi Mulia Dua menggunakan metode Islamic Montessori, Islamic Cambridge, Nasional & Kurikulum Budi Mulia Dua serta berlandaskan filosofi pada 5 Pilar (Faith in Allah SWT, Respect, Cleanliness, Responsibility, Honesty) & 8 Basis Pembelajaran. Program Akademik Sekolah yaitu Program Inklusi, Student Advisory, Fieldtrip, Homestay, Outbond, Kelas Sosial dan Magang, Tahsinul Quran, Juz ‘Amma Movement, Tapak Suci dan BMD Awards. Program Non-Akademik Sekolah yaitu School Club, Sinematografi, Fotografi, Art, Basket, Futsal, Olimpiade & Karya Ilmiah, Diksi, Tari, Biola, Vocal group, Teater, Bahasa Jepang dan Komputer. Program Luar Negeri yaitu Ritsumeikan Global Summit, Science Fair and Art Performance, Japan; Study Tour and School Visit Malaysia - Singapore; Homestay & Cultural Exchange Program to Vadislava Vancury, Prague, Chezh Republic; Homestay & Collaboration Concert With Kippenberg; Gymnasium, Bremen, Germany; Homestay & Cultural Exchange Program to Visserhof Lyceum, Netherland; Homestay & Cultural Exchange Program to 39 Beijing High School China; Homestay & Cultural Exchange Program to South Korea; Homestay & Cultural Exchange Program, Japan.